Items where Author is "Larkin, D M"

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Number of items: 47.

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Yurchenko, A A and Deniskova, T E and Yudin, N S and Dotsev, A V and Khamiruev, T N and Selionova, M I and Egorov, S V and Reyer, H and Wimmers, K and Brem, G and Zinovieva, N A and Larkin, D M (2019) High-density genotyping reveals signatures of selection related to acclimation and economically important traits in 15 local sheep breeds from Russia. BMC Genomics, 20 (Suppl 3).

Torgasheva, A A and Malinovskaya, L P and Zadesenets, K S and Karamysheva, T V and Kizilova, E A and Akberdina, E A and Pristyazhnyuk, I E and Shnaider, E P and Volodkina, V A and Saifitdinova, A F and Galkina, S A and Larkin, D M and Rubtsov, N B and Borodin, P M (2019) Germline-restricted chromosome (GRC) is widespread among songbirds. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA.

Igoshin, A V and Yurchenko, A A and Belonogova, N M and Petrovsky, D V and Aitnazarov, R B and Soloshenko, V A and Yudin, N S and Larkin, D M (2019) Genome-wide association study and scan for signatures of selection point to candidate genes for body temperature maintenance under the cold stress in Siberian cattle populations. BMC Genomics, 20 (Suppl 1).

Griffin, D K and Larkin, D M and O'Connor, R E (2019) Time lapse: A glimpse into prehistoric genomics. European Journal of Medical Genetics. (In Press)

Igoshin, A V and Yudin, N S and Belonogova, N M and Larkin, D M (2019) Genome-wide association study for body weight in cattle populations from Siberia. ANIMAL GENETICS, 50 (3). pp. 250-253.

Farré Belmonte, M and Kim, J and Proskuryakova, A A and Zhang, Y and Kulemzina, A I and Li, Q., Zhou, Y and Xiong, Y and Johnson, J L and Perelman, P and Johnson, W E and Warren, W and Kukekova, A V and Zhang, G and O’Brien, S J and Ryder, O A and Graphodatsky, A S and Ma, J and Lewin, H A and Larkin, D M (2019) Evolution of gene regulation in ruminants differs between evolutionary breakpoint regions and homologous synteny blocks. Genome Research.

Ruvinskiy, D and Larkin, D M and Farré, M (2019) A Near Chromosome Assembly of the Dromedary Camel Genome. Frontiers in Genetics, 10 (32).

Farré, M and Li, Q and Zhou, Y and Damas, J and Chemnick, L G and Kim, J and Ryder, O A and Ma, J and Zhang, G and Larkin, D M and Lewin, H A (2019) A Near-Chromosome-Scale genome assembly of the gemsbok (Oryx gazella): an iconic antelope of the Kalahari Desert. GigaScience. (In Press)

O'Connor, R E and Kiazim, L and Skinner, B and Fonseka, G and Joseph, S and Jennings, R and Larkin, D M (2018) Patterns of microchromosome organization remain highly conserved throughout avian evolution. Chromosoma, 128 (1). pp. 21-29.

O'Connor, R E and Farré, M and Joseph, S and Damas, J and Kiazim, L and Jennings, R and Bennett, S and Slack, E A and Allanson, E and Larkin, D M and Griffin, D K (2018) Chromosome-level assembly reveals extensive rearrangement in saker falcon and budgerigar, but not ostrich, genomes. Genome Biology, 19 (171).

Joseph, S and O'Connor, R E and Al Mutery, A and Watson, M and Larkin, D M and Griffin, D (2018) Chromosome Level Genome Assembly and Comparative Genomics between Three Falcon Species Reveals an Unusual Pattern of Genome Organisation. Diversity, 10 (4). p. 113.

Damas, J and Kim, J and Farré, M and Griffin, D K and Larkin, D M (2018) Reconstruction of avian ancestral karyotypes reveals differences in the evolutionary history of macro- and microchromosomes. Genome Biology, 19 (155).

Yurchenko, A A and Daetwyler, H D and Yudin, N and Schnabel, R D and Vander Jagt, C J and Soloshenko, V and Lhasaranov, B and Popov, R and Taylor, J F and Larkin, D M (2018) Scans for signatures of selection in Russian cattle breed genomes reveal new candidate genes for environmental adaptation and acclimation. Scientific Reports (Nature), 8. p. 12984.

Rando, H and Farré, M and Robson, M and Won, N and Johnson, J and Buch, R and Bastounes, E and Xiang, X and Feng, S and Liu, S and Xiong, Z and Kim, J and Zhang, G and Trut, L and Larkin, D M and Kukekova, A (2018) Construction of Red Fox Chromosomal Fragments from the Short-Read Genome Assembly. Genes, 9 (6). p. 308.

O'Connor, R E and Romanov, M N and Kiazim, L G and Barrett, P M and Farre Belmonte, M and Damas, J and Ferguson-Smith, M and Valenzuela, N and Larkin, D M and Griffin, D K (2018) Reconstruction of the diapsid ancestral genome permits chromosome evolution tracing in avian and non-avian dinosaurs. Nature Communications, 9 (1). p. 1883.

Drpic, D and Almeida, A C and Aguiar, P and Renda, F and Damas, J and Lewin, H A and Larkin, D M and Khodjakov, A and Maiato, H (2018) Chromosome Segregation Is Biased by Kinetochore Size. CURRENT BIOLOGY, 28 (9). pp. 1344-1365.

Lenis, V E and Swain, M and Larkin, D M (2018) G-Anchor: a novel approach for whole-genome comparative mapping utilising evolutionary conserved DNA sequences. GigaScience, 7 (5).

Perelman, P L and Pichler, R and Gaggl, A and Larkin, D M and Raudsepp, T and Alshanbari, F and Holl, H M and Brooks, S A and Burger, P A and Periasamy, K (2018) Construction of two whole genome radiation hybrid panels for dromedary (Camelus dromedarius): 5000RAD and 15000RAD. Scientific Reports, 8 (1). ISSN 2045-2322

Larkin, D M (2018) Turning back the evolutionary clock. Laboratory News.

Yudin, N S and Larkin, D M and Ignatieva, E V (2017) A compendium and functional characterization of mammalian genes involved in adaptation to Arctic or Antarctic environments. BMC Genetics, 18.

Yurchenko, A and Yudin, N and Aitnazarov, R and Plyusnina, A and Brukhin, V and Soloshenko, V and Lhasaranov, B and Popov, R and Paronyan, I A and Plemyashov, K V and Larkin, D M (2017) Genome-wide genotyping uncovers genetic profiles and history of the Russian cattle breeds. Heredity, 120 (2). pp. 125-137.

Proskuryakova, A A and Kulemzina, I A and Perelman, L P and Makunin, I A and Larkin, D M and Farré, M and Kukekova, V A and Lynn Johnson, J and Lemskaya, A N and Beklemisheva, R V and Roelke-Parker, E M and Bellizzi, J and Ryder, A O and O’Brien, J S and Graphodatsky, S A (2017) X Chromosome Evolution in Cetartiodactyla. Genes, 8 (9). p. 216.

Kim, J and Farre Belmonte, M and Auvil, L S and Capitanu, B and Larkin, D M and Ma, J and Lewin, H A (2017) Reconstruction and evolutionary history of eutherian chromosomes. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 114 (27). E5379-E5388. ISSN 0027-8424

Damas, J and O'Connor, R and Farré, M and Lenis, V P E and Martell, H J and Mandawala, A and Fowler, K E and Joseph, S and Swain, M T and Griffin, D K and Larkin, D M (2017) Upgrading short read animal genome assemblies to chromosome level using comparative genomics and a universal probe set. Genome Research, 27. pp. 697-708.

Larkin, D M and Yudin, N S (2017) The genomes and history of domestic animals. Molecular Genetics, Microbiology and Virology, 31 (4). pp. 197-202.

Makunin, A and Kichigin, I G and Larkin, D M and O'Brien, P C M and Ferguson-Smith, M A and Yang, F and Proskuryakova, A A and Vorobieva, N V and Chernyaeva, E and O'Brien, S J and Graphodatsky, A S and Trifonov, V (2016) Contrasting origin of B chromosomes in two cervids (Siberian roe deer and grey brocket deer) unravelled by chromosome-specific DNA sequencing. BMC Genomics, 17 (1). p. 618.

Farré, M and Narayan, J and Slavov, G T and Damas, J and Auvil, L and Li, C and Jarvis, E D and Burt, D W and Griffin, D K and Larkin, D M (2016) Novel insights into chromosome evolution in birds, archosaurs, and reptiles. Genome Biology and Evolution, 8 (8). pp. 2442-2451.

Adams, H A and Sonstegard, T S and VanRaden, P M and Null, D J and Van Tassell, C P and Larkin, D M and Lewin, H A (2016) Identification of a nonsense mutation in APAF1 that is likely causal for a decrease in reproductive efficiency in Holstein dairy cattle. JOURNAL OF DAIRY SCIENCE, 99 (8). pp. 6693-6701.

Bryan, C and Guterman, G and Ma, K-L and Lewin, H and Larkin, D M and Kim, J and Ma, J and Farre Belmonte, M (2016) Synteny Explorer: An Interactive Visualization Application for Teaching Genome Evolution. IEEE Transactions on Visualization and Computer Graphics, 23 (1). pp. 711-720.

Beynon, S E and Slavov, G T and Farré, M and Sunduimijid, B and Waddams, K and Davies, B and Haresign, W and Kijas, J and MacLeod, I M and Newbold, C J and Davies, L and Larkin, D M (2015) Population structure and history of the Welsh sheep breeds determined by whole genome genotyping. BMC Genetics, 16 (65).

Schmid, M and Smith, J and Burt, D W and Aken, B L and Antin, P B and Archibald, A L and Ashwell, C and Blackshear, P J and Farré, M and Larkin, D M (2015) Third Report on Chicken Genes and Chromosomes 2015. CYTOGENETIC AND GENOME RESEARCH, 145. pp. 78-179.

Farré, M and Narayan, J and Slavov, G T and Auvil, L and Lewin, H A and Larkin, D M (2015) AMNIOTE EVOLUTION: THE ROLE OF CHROMOSOME REARRANGEMENTS. Chromosome Research, 23 (2). p. 366.

Romanov, M N and Farré, M and Lithgow, P E and O'Connor, R and Fowler, K E and Skinner, B M and Larkin, D M and Griffin, D K (2015) AVIAN ANCESTRAL KARYOTYPE RECONSTRUCTION AND DIFFERENTIAL RATES OF INTER-AND INTRA-CHROMOSOMAL CHANGE IN DIFFERENT LINEAGES. Chromosome Research, 23 (2). p. 414.

Griffin, D K and Farré, M and Lithgow, P and O'Connor, R and Fowler, K E and Romanov, M N and Larkin, D M (2015) AVIAN CHROMONOMICS GOES FUNCTIONAL. Chromosome Research, 23 (2). p. 367.

Capilla, L and Sanchez-Guillen, R A and Farré, M and Larkin, D M and Ventura, J and Ruiz-Herrera, A (2015) GENOMIC SIGNATURES OF EVOLUTIONARY RESHUFFLING IN MAMMALS. Chromosome Research, 23 (2). p. 375.

Koepfli, K P and Paten, B and Antunes, A and Belov, K and Bustamante, C and Castoe, T A and Clawson, H and Crawford, A J and Diekhans, M and Distel, D and Durbin, R and Earl, D A and Fujita, M K and Gamble, T and Georges, A and Gemmell, N J and Gilbert, M T P and Graves, J M and Green, R E and Hickey, G and Jarvis, E and Johnson, W E and Komissarov, A and Korf, I and Kuhn, R M and Larkin, D M and Lewin, H A and Lopez, J V and Ma, J and Marques-Bonet, T and Miller, W and Murphy, R and Pevzner, P and Shapiro, B and Steiner, C and Tamazian, G and Venkatesh, B and Wang, J and Wayne, R K and Wiley, E and Yang, H and Zhang, G and Haussler, D and Ryder, O and O'Brien, S J (2015) The Genome 10K Project: A Way Forward Further. Annual Review of Animal Biosciences, 3. pp. 57-111.

O'Connor, R E and Romanov, M N and Farré, M and Larkin, D M and Griffin, D K (2015) RECONSTRUCTION OF THE PUTATIVE SAURIAN KARYOTYPE AND THE HYPOTHETICAL CHROMOSOME REARRANGEMENTS THAT OCCURRED ALONG THE DINOSUAR LINEAGE. Chromosome Research, 23 (2). pp. 379-380.

Damas, J and Farré, M and Lithgow, P and Romanov, M and Li, C and Griffin, D K and Larkin, D M (2015) TOWARDS THE CONSTRUCTION OF AVIAN CHROMOSOME ASSEMBLIES. Chromosome Research, 23 (2). pp. 378-379.

Zhang, G and Li, C and Li, Q and Li, B and Larkin, D M and Lee, C (2014) Comparative genomics reveals insights into avian genome evolution and adaptation. SCIENCE, 346 (6215). pp. 1311-1320.

Romanov, M N and Farré, M and Lithgow, P E and Fowler, K E and Skinner, B M and O'Connor, R and Fonseka, G and Backstrom, N and Matsuda, Y and Nishida, C and Houde, P and Jarvis, E D and Ellegren, H and Burt, D W and Larkin, D M and Griffin, D K (2014) Reconstruction of gross avian genome structure, organization and evolution suggests that the chicken lineage most closely resembles the dinosaur avian ancestor. BMC Genomics, 15.

Griffin, D K and Farré, M and Lithgow, P and O'Connor, R and Fowler, K E and Romanov, M and Larkin, D M (2014) AVIAN CYTOGENETICS GOES FUNCTIONAL. Chromosome Research, 22 (3). pp. 423-424.

Fang, X D and Nevo, E and Han, L J and Levanon, E Y and Zhao, J and Avivi, A and Larkin, D M and Jiang, X T and Feranchuk, S and Zhu, Y B and Fishman, A and Feng, Y and Sher, N and Xiong, Z Q and Hankeln, T and Huang, Z Y and Gorbunova, V and Zhang, L and Zhao, W and Wildman, D E and Xiong, Y Q and Gudkov, A and Zheng, Q M and Rechavi, G and Liu, S Y and Bazak, L and Chen, J and Knisbacher, B A and Lu, Y and Shams, I and Gajda, K and Farré, M and Kim, J and Lewin, H A and Ma, J and Band, M and Bicker, A and Kranz, A and Mattheus, T and Schmidt, H and Seluanov, A and Azpurua, J and McGowen, M R and Ben Jacob, E and Li, K X and Peng, S L and Zhu, X Q and Liao, X K and Li, S C and Krogh, A and Zhou, X and Brodsky, L and Wang, J (2014) Genome-wide adaptive complexes to underground stresses in blind mole rats Spalax. Nature Communications, 5.

Kim, J and Larkin, D M and Asan, Q C and Zhang, Y F and Ge, R L and Auvil, L and Capitanu, B and Zhang, G J and Lewin, H A and Maj, J (2013) Reference-assisted chromosome assembly. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 110 (5). pp. 1785-1790.

Larkin, D M (2012) Analyses of pig genomes provide insight into porcine demography and evolution. Nature, 491 (7424). pp. 393-398.

Larkin, D M and Daetwyler, H D and Hernandez, A G and Wright, C L and Hetrick, L A and Boucek, L and Bachman, S L and Band, MR and Akraiko, TV and Cohen-Zinder, M and Thimmapuram, J and Macleod, I M and Harkins, T T and McCague, J E and Goddard, M E and Hayes, B J and Lewin, H A (2012) Whole-genome resequencing of two elite sires for the detection of haplotypes under selection in dairy cattle. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 109 (20). pp. 7693-7698.

Larkin, D M and Pape, G and Donthu, R and Auvil, L and Welge, M and Lewin, H A (2009) Breakpoint regions and homologous synteny blocks in chromosomes have different evolutionary histories. Genome Research, 19 (5). pp. 770-777.

Other

Larkin, D M Full chromosomal-level genome assembly of highly rearranged avian genomes provides novel insight into the mechanisms of chromosomal change. UNSPECIFIED.

This list was generated on Thu Jun 27 07:24:04 2019 BST.